Publications

Restricted epitope specificity determined by variable region germline segment pairing in rodent antibody repertoires.

Yi-Chun Hsiao, Ying-Jiun J. Chen, Leonard D. Goldstein, Jia Wu, Zhonghua Lin, Kellen Schneider, Subhra Chaudhuri, Aju Antony, Kanika Bajaj Pahuja, Zora Modrusan, Dhaya Seshasayee, Somasekar Seshagiri & Isidro Hötzel

DOI:10.1080/19420862.2020.1722541

The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins.

Kushal Suryamohan, Sajesh P. Krishnankutty, Joseph Guillory, Matthew Jevit, Markus S. Schröder, Meng Wu, Boney Kuriakose, Oommen K. Mathew, Rajadurai C. Perumal, Ivan Koludarov, Leonard D. Goldstein, Kate Senger, Mandumpala Davis Dixon, Dinesh Velayutham, Derek Vargas, Subhra Chaudhuri, Megha Muraleedharan, Ridhi Goel, Ying-Jiun J. Chen, Aakrosh Ratan, Peter Liu, Brendan Faherty, Guillermo de la Rosa, Hiroki Shibata, Miriam Baca, Meredith Sagolla, James Ziai, Gus A. Wright, Domagoj Vucic, Sangeetha Mohan, Aju Antony, Jeremy Stinson, Donald S. Kirkpatrick, Rami N. Hannoush, Steffen Durinck, Zora Modrusan, Eric W. Stawiski, Kristen Wiley, Terje Raudsepp, R. Manjunatha Kini, Arun Zachariah & Somasekar Seshagiri

DOI:10.1038/s41588-019-0559-8

Massively parallel single-cell B-cell receptor sequencing enables rapid discovery of diverse antigen-reactive antibodies.

Leonard D. Goldstein, Ying-Jiun J. Chen, Jia Wu, Subhra Chaudhuri, Yi-Chun Hsiao, Kellen Schneider, Kam Hon Hoi, Zhonghua Lin, Steve Guerrero, Bijay S. Jaiswal, Jeremy Stinson, Aju Antony, Kanika Bajaj Pahuja, Dhaya Seshasayee, Zora Modrusan, Isidro Hötzel & Somasekar Seshagiri

DOI:10.1038/s41598-018-27084-y

Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (Oryza sativa ssp. indica cv. Purpleputtu)

V. B. Reddy Lachagari1, Ravi Gupta, Sivarama Prasad Lekkala, Lakshmi Mahadevan, Boney Kuriakose, Navajeet Chakravartty, A. V. S. K. Mohan Katta, Sam Santhosh, Arjula R. Reddy and George Thomas

DOI:10.3389/fpls.2019.00513

Complete mitogenome reveals genetic divergence and phylogenetic relationships among Indian cattle (Bos indicus) breeds

R. Kumar Pramod, Dinesh Velayutham, Sajesh P. K., Beena P. S., Anil Zachariah,Arun Zachariah, Chandramohan B., Sujith S. S., Ganapathi P., Bangarusamy Dhinoth Kumar, Sosamma Iype,Ravi Gupta, Sam Santhosh & George Thomas

DOI:10.1080/10495398.2018.1476376

Next-generation sequencing analysis reveals high bacterial diversity in wild venomous and non-venomous snakes from India

Sajesh Puthenpurackal Krishnankutty, Megha Muraleedharan, Rajadurai Chinnasamy Perumal, Saju Michael, Jubina Benny, Bipin Balan, Pramod Kumar, Jishnu Manazhi, Bangaruswamy Dhinoth Kumar, Sam Santhosh, George Thomas, Ravi Gupta & Arun Zachariah

DOI:10.1186/s40409-018-0181-8

Reinvestigating the status of malaria parasite (Plasmodium sp.) in Indian non-human primates

Jyotsana Dixit ,Arun Zachariah,Sajesh P. K.,Bathrachalam Chandramohan,Vinoth Shanmuganatham,K. Praveen Karanth

DOI:10.1371/journal.pntd.0006801

Actionable Activating Oncogenic ERBB2/HER2 Transmembrane and Juxtamembrane Domain Mutations

Kanika Bajaj Pahuja, Thong T. Nguyen, Bijay S. Jaiswal, Kumar Prabhash, Tarjani M. Thaker, Kate Senger, Subhra Chaudhuri, Noelyn M. Kljavin, Aju Antony, Sameer Phalke, Prasanna Kumar, Marco Mravic, Eric W. Stawiski, Derek Vargas, Steffen Durinck, Ravi Gupta, Arati Khanna-Gupta, Sally E. Trabucco, Ethan S. Sokol, Ryan J. Hartmaier, Ashish Singh, Anuradha Chougule, Vaishakhi Trivedi, Amit Dutt, Vijay Patil, Amit Joshi, Vanita Noronha, James Ziai, Sripad D. Banavali, Vedam Ramprasad, William F. DeGrado, Raphael Bueno, Natalia Jura, Somasekar Seshagiri

DOI:10.1016/j.ccell.2018.09.010

Extended genotypic evaluation and comparison of twenty-two cases of lethal EEHV1 hemorrhagic disease in wild and captive Asian elephants in India

A. Zachariah,P. K. Sajesh,S. Santhosh,C. Bathrachalam,M. Megha,J. Pandiyan,M. Jishnu,R. S. Kobragade,S. Y. Long,J-C Zong,E. M. Latimer,S. Y. Heaggans,G. S. Hayward

DOI:10.1371/journal.pone.0202438

Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus

Thong T. Nguyen, Kushal Suryamohan, Boney Kuriakose, Vasantharajan Janakiraman, Mike Reichelt, Subhra Chaudhuri, Joseph Guillory, Neethu Divakaran, P. E. Rabins, Ridhi Goel, Bhabesh Deka, Suman Sarkar, Preety Ekka, Yu-Chih Tsai, Derek Vargas, Sam Santhosh, Sangeetha Mohan, Chen-Shan Chin, Jonas Korlach, George Thomas, Azariah Babu & Somasekar Seshagiri

DOI:10.1038/s41598-018-27084-y

Transcriptomic Analysis of Thalidomide Challenged Chick Embryo Suggests Possible Link between Impaired Vasculogenesis and Defective Organogenesis

Vimal Veeriah, Pavitra Kumar, Lakshmikirupa Sundaresan, Zeenath Mafitha, Ravi Gupta, Uttara Saran, Jeganathan Manivannan, Suvro Chatterjee

DOI:10.1021/acs.chemrestox.7b00199

Possible role of rare variants in Trace amine associated receptor 1 in schizophrenia

JibinJohn, Prachi Kukshal, Triptish Bhatiab, K.V.Chowdari, V.L.Nimgaonkar, S.N.Deshpande, B.K.Thelma

DOI:10.1016/j.schres.2017.02.020

A novel method for immobilization of proteins via entrapment of magnetic nanoparticles through epoxy cross-linking

Tessy Iype, Jaiby Thomas, Sangeetha Mohan, Kochurani K.Johnson, Ligi E.GeorgebLizebona A, Ambattu, Aniruddh Bhati, Kristen Ailsworth, Bindu Menon, Sunayana M.Rayabandla, Rachel A. Jesudasan, SamSanthosh, Chaniyilparampu N.Ramchand

DOI:10.1016/j.ab.2016.12.007

Halodesulfovibrio spirochaetisodalis gen. nov. sp. nov. and reclassification of four Desulfovibrio spp

Y. Shivani​, Y. Subhash​, Ch. Sasikala1, Ch. V. Ramana

DOI:10.1099/ijsem.0.001574

Annotation transfer by homology among closely related genomes helps to identify protein function in Plasmodium species

Devaraj Raghul Rajan, Bathrachalam Chandramohan

DOI:10.1504/IJBRA.2017.082054

Draft Genome Sequence ofKlebsiellapneumoniaeOK8, a Multidrug-ResistantMouse and Human Pathogen

Easa Nagamalleswari, Valakunja Nagaraja

DOI:10.1128/genomeA.01018-17

Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus

Shambhu G.Aralaguppe, Abu BakarSiddik, Ashokkumar Manickam, Anoop T.Ambikan, Milner M.Kumar, Sunjay JudeFernandes, Wondwossen Amogne, Dhinoth K.Bangaruswamy, Luke ElizabethHanna, Anders Sonnerborg, Ujjwal Neogi

DOI:10.1016/j.jviromet.2016.07.010

Transcriptomic Analysis of Chloroquine-Sensitive and Chloroquine-Resistant Strains of Plasmodium falciparum: Toward Malaria Diagnostics and Therapeutics for Global Health

Hiasindh Ashmi Antony, Vrushali Pathak, Subhash Chandra Parija, Kanjaksha Ghosh, and Amrita Bhattacherjee

DOI:doi.org/10.1089/omi.2016.0058

The expression dynamics of mechanosensitive genes in extra-embryonic vasculature after heart starts to beat in chick embryo

Rajendran Saranya, Sundaresan Lakshmikirupa, Rajendran Krithika, Selvaraj Monica, Gupta Ravi, Chatterjee Suvro

DOI:10.3233/BIR-15075

Harvesting clues from genome wide transcriptome analysis for exploring thalidomide mediated anomalies in eye development of chick embryo: Nitric oxide rectifies the thalidomide mediated anomalies by swinging back the system to normal transcriptome pattern

Pavitra Kumar, Dharanibalan Kasiviswanathan, Lakshmikirupa Sundaresan, Priyadarshan Kathirvel, Vimal Veeriah, Priya Dutta, Kavitha Sankaranarayanan, Ravi Gupta, Suvro Chatterjee

DOI:10.1016/j.biochi.2015.12.013


Association of 16SrII-D Phytoplasma With Phyllody Disease in Sesame (Sesamum indicum) in Telangana From Southern India

I. Pamei and R. Makandar

DOI:10.1094/PDIS-11-15-1348-PDN

Whole genome sequencing and analysis of Swarna, a widely cultivated indica rice variety with low glycemic index

Pasupathi Rathinasabapathi, Natarajan Purushothaman, Ramprasad VL and Madasamy Parani

DOI:10.1038/srep11303

Prevalence of genetic variants associated with cardiovascular disease risk and drug response in the Southern Indian population of Kerala

Lakshmi Mahadevan, Ancy Yesudas, P. K. Sajesh, S. Revu, Prasanna Kumar, Devi Santhosh, Sam Santhosh, J. M. Sashikumar,1 V. K. Gopalakrishnan,Joji Boben and Changanamkandath Rajesh

DOI:10.4103/0971-6866.142896

Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut

Alka Gupta, Murali Gopal, George V. Thomas, Vinu Manikandan, John Gajewski, George Thomas, Somasekar Seshagiri, Stephan C. Schuster,P reeti Rajesh , Ravi Gupta

DOI:10.1371/journal.pone.0104259

Cost-efficient HIV-1 drug resistance surveillance using multiplexed high-throughput amplicon sequencing: implications for use in low- and middle-income countries

Halime Ekici, Shwetha D. Rao, Anders Sönnerborg, Vedam L. Ramprasad, Ravi Gupta, Ujjwal Neogi

DOI:10.1093/jac/dku278

Transcriptome profiling reveals higher vertebrate orthologous of intra-cytoplasmic pattern recognition receptors in grey bambooo shark

Tirumurugaan Krishnaswamy Gopalan, Pradheepa Gururaj, Ravi Gupta,Dhinakar Raj Gopal, Preeti Rajesh,Balachandran Chidambaram, Aravindan Kalyanasundaram,Raja Angamuthu

DOI:10.1371/journal.pone.0100018

DNA Barcoding to Detect Chilli Adulteration in Traded Black Pepper Powder

V. A. Parvathy, V. P. Swetha, T. E. Sheeja, N. K. Leela, B. Chempakam & B. Sasikumar

DOI:10.1080/08905436.2013.870078

Sequencing and analysis of a South Asian-Indian personal genome

Ravi Gupta, Aakrosh Ratan, Changanamkandath Rajesh, Rong Chen, Hie Lim Kim, Richard Burhans, Webb Miller, Sam Santhosh, Ramana V Davuluri, Atul J Butte, Stephan C Schuster, Somasekar Seshagiri & George Thomas

DOI:10.1186/1471-2164-13-440


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